Variant report

Variant	rs9332228
Chromosome Location	chr10:96745195-96745196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17882572	0.86[ASN][1000 genomes]
rs17886522	0.86[ASN][1000 genomes]
rs1934961	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1934962	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1934963	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs4086116	0.94[LWK][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs4917639	0.94[LWK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs4918797	0.85[AFR][1000 genomes]
rs4918798	0.85[AFR][1000 genomes]
rs56061138	0.86[ASN][1000 genomes]
rs56233220	0.81[AFR][1000 genomes]
rs56825054	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57554269	0.86[ASN][1000 genomes]
rs58800757	1.00[ASN][1000 genomes]
rs59527999	0.86[ASN][1000 genomes]
rs61886768	0.81[AFR][1000 genomes]
rs61886778	0.83[AFR][1000 genomes]
rs61886804	0.83[AFR][1000 genomes]
rs7079533	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs74154111	0.86[ASN][1000 genomes]
rs7921656	0.86[ASN][1000 genomes]
rs9332096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332116	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332118	1.00[ASN][1000 genomes]
rs9332127	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332128	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332129	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332181	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332198	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332220	0.85[AFR][1000 genomes]
rs9332223	1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96738000-96749800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:96738200-96746000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:96738800-96748600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:96740000-96746400	Strong transcription	Liver	Liver
5	chr10:96743800-96751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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