Variant report

Variant	rs9332139
Chromosome Location	chr10:96721592-96721593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17882572	0.86[ASN][1000 genomes]
rs17886522	0.86[ASN][1000 genomes]
rs1934961	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1934962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1934963	0.84[AFR][1000 genomes]
rs4086116	0.83[AFR][1000 genomes]
rs4917639	0.84[AFR][1000 genomes]
rs4918797	0.85[AFR][1000 genomes]
rs4918798	0.85[AFR][1000 genomes]
rs56061138	0.86[ASN][1000 genomes]
rs56233220	0.81[AFR][1000 genomes]
rs56825054	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57554269	0.86[ASN][1000 genomes]
rs58800757	1.00[ASN][1000 genomes]
rs59527999	0.86[ASN][1000 genomes]
rs61886768	0.81[AFR][1000 genomes]
rs61886778	0.83[AFR][1000 genomes]
rs61886804	0.83[AFR][1000 genomes]
rs7079533	0.86[ASN][1000 genomes]
rs74154111	0.86[ASN][1000 genomes]
rs7921656	0.86[ASN][1000 genomes]
rs9332096	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332116	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332118	1.00[ASN][1000 genomes]
rs9332127	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332128	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332129	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332198	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332220	0.85[AFR][1000 genomes]
rs9332223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9663206	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv551962	chr10:96680265-96734339	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv551963	chr10:96720262-96743943	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96718600-96737600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:96720600-96723800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96720800-96722200	Weak transcription	Liver	Liver

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