Variant report

Variant	rs58800757
Chromosome Location	chr10:96758308-96758309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17882572	0.86[ASN][1000 genomes]
rs17886522	0.86[ASN][1000 genomes]
rs1934961	0.92[ASN][1000 genomes]
rs1934962	1.00[ASN][1000 genomes]
rs56825054	0.92[ASN][1000 genomes]
rs57554269	0.86[ASN][1000 genomes]
rs59527999	0.86[ASN][1000 genomes]
rs74154111	0.86[ASN][1000 genomes]
rs7921656	0.86[ASN][1000 genomes]
rs9332096	1.00[ASN][1000 genomes]
rs9332116	1.00[ASN][1000 genomes]
rs9332118	1.00[ASN][1000 genomes]
rs9332127	1.00[ASN][1000 genomes]
rs9332128	1.00[ASN][1000 genomes]
rs9332129	1.00[ASN][1000 genomes]
rs9332136	1.00[ASN][1000 genomes]
rs9332139	1.00[ASN][1000 genomes]
rs9332149	1.00[ASN][1000 genomes]
rs9332181	1.00[ASN][1000 genomes]
rs9332198	1.00[ASN][1000 genomes]
rs9332219	1.00[ASN][1000 genomes]
rs9332223	1.00[ASN][1000 genomes]
rs9332228	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96757400-96758400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:96757400-96758400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:96757400-96758600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:96757600-96758400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:96757600-96758400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:96757800-96758400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:96757800-96758400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:96757800-96758400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:96758000-96758400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:96758000-96758400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:96758000-96758400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:96758200-96758400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:96758200-96758400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:96758200-96758400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:96758200-96759400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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