Variant report

Variant	rs11573959
Chromosome Location	chr8:119934262-119934263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10505346	0.94[ASN][1000 genomes]
rs10505349	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10955911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955912	0.94[ASN][1000 genomes]
rs11573838	0.93[ASN][1000 genomes]
rs11573896	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11984630	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11997782	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1485287	0.94[ASN][1000 genomes]
rs1485288	0.94[ASN][1000 genomes]
rs1493943	0.82[ASN][1000 genomes]
rs17758204	0.81[ASN][1000 genomes]
rs1994276	0.94[ASN][1000 genomes]
rs2875845	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3134048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073354	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4130891	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61470971	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67132155	0.90[ASN][1000 genomes]
rs72680365	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72680377	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv8383	chr8:119926155-119934422	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119926800-119934600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:119927000-119935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119927000-119935600	Weak transcription	Osteobl	bone
4	chr8:119927200-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:119927400-119941400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:119928200-119936200	Weak transcription	Fetal Intestine Large	intestine
7	chr8:119928400-119936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:119928800-119956600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:119929000-119935400	Weak transcription	NHDF-Ad	bronchial
10	chr8:119929000-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:119929000-119940400	Weak transcription	HSMMtube	muscle
12	chr8:119929200-119935400	Weak transcription	Hela-S3	cervix
13	chr8:119929200-119936200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:119929200-119936200	Weak transcription	HSMM	muscle
15	chr8:119929200-119936400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:119929200-119936600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:119929200-119947400	Weak transcription	NH-A	brain
18	chr8:119929400-119936000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:119929400-119936600	Weak transcription	NHLF	lung
20	chr8:119933200-119936400	Weak transcription	Aorta	Aorta
21	chr8:119933400-119938000	Weak transcription	Liver	Liver
22	chr8:119933600-119942600	Weak transcription	Fetal Intestine Small	intestine
23	chr8:119933800-119941200	Weak transcription	Rectal Mucosa Donor 31	rectum

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