Variant report
| Variant | rs72680365 |
|---|---|
| Chromosome Location | chr8:119904394-119904395 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10505346 | 0.88[ASN][1000 genomes] |
| rs10505349 | 0.88[ASN][1000 genomes] |
| rs10955911 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10955912 | 0.88[ASN][1000 genomes] |
| rs11573838 | 0.86[ASN][1000 genomes] |
| rs11573896 | 0.88[ASN][1000 genomes] |
| rs11573959 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11984630 | 0.88[ASN][1000 genomes] |
| rs11997782 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1485287 | 0.88[ASN][1000 genomes] |
| rs1485288 | 0.88[ASN][1000 genomes] |
| rs1493943 | 0.88[ASN][1000 genomes] |
| rs17757532 | 0.82[ASN][1000 genomes] |
| rs1994276 | 0.88[ASN][1000 genomes] |
| rs2875845 | 0.88[ASN][1000 genomes] |
| rs3134048 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4073354 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4130891 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61470971 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs67132155 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72680377 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831444 | chr8:119757355-119915966 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv470234 | chr8:119856209-119906530 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv891415 | chr8:119886923-119921354 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:119903800-119908200 | Weak transcription | Fetal Intestine Small | intestine |
