Variant report

Variant	rs4073354
Chromosome Location	chr8:119911409-119911410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119897848..119900046-chr8:119910331..119912294,2	MCF-7	breast:
2	chr8:119909435..119912198-chr8:119913488..119916244,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10505346	0.88[ASN][1000 genomes]
rs10505349	0.88[ASN][1000 genomes]
rs10955911	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955912	0.88[ASN][1000 genomes]
rs11573838	0.86[ASN][1000 genomes]
rs11573896	0.88[ASN][1000 genomes]
rs11573939	0.81[EUR][1000 genomes]
rs11573959	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11984630	0.88[ASN][1000 genomes]
rs11997782	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1485287	0.88[ASN][1000 genomes]
rs1485288	0.88[ASN][1000 genomes]
rs1493943	0.88[ASN][1000 genomes]
rs17757532	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1994276	0.88[ASN][1000 genomes]
rs2875845	0.88[ASN][1000 genomes]
rs3134048	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4130891	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61470971	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67132155	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72680365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680377	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119908200-119915200	Enhancers	Fetal Intestine Small	intestine
2	chr8:119909000-119912000	Enhancers	Fetal Intestine Large	intestine
3	chr8:119909200-119914400	Weak transcription	Aorta	Aorta
4	chr8:119909200-119916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:119909800-119914400	Weak transcription	HSMM	muscle
6	chr8:119910000-119912600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119910000-119913200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:119910000-119913800	Weak transcription	Osteobl	bone
9	chr8:119910000-119914000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:119910000-119914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:119910000-119914200	Weak transcription	Pancreas	Pancrea
12	chr8:119910000-119915000	Weak transcription	HUVEC	blood vessel
13	chr8:119910200-119912600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119910200-119912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:119910200-119912800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:119910200-119912800	Weak transcription	NHDF-Ad	bronchial
17	chr8:119910200-119914200	Weak transcription	Stomach Mucosa	stomach
18	chr8:119910200-119914600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:119910200-119914800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:119910200-119914800	Weak transcription	NHEK	skin
21	chr8:119910200-119917200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:119910400-119912800	Weak transcription	NHLF	lung
23	chr8:119910600-119914400	Weak transcription	Hela-S3	cervix
24	chr8:119910600-119914400	Weak transcription	HMEC	breast
25	chr8:119910800-119911600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:119910800-119913400	Weak transcription	Liver	Liver
27	chr8:119911000-119914800	Weak transcription	Rectal Mucosa Donor 31	rectum

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