Variant report

Variant	rs11581232
Chromosome Location	chr1:179010607-179010608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179008660..179014261-chr1:179016259..179020723,5	MCF-7	breast:
2	chr1:178992800..178999926-chr1:179009509..179018222,23	K562	blood:

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3813638	0.80[AMR][1000 genomes]
rs4652348	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6425512	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6697029	0.81[ASN][1000 genomes]
rs7532578	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7538498	0.81[AMR][1000 genomes]
rs7544801	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375162	chr1:179008554-179011102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:178998400-179027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:179001600-179017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:179001800-179016200	Weak transcription	Aorta	Aorta
5	chr1:179002000-179019200	Weak transcription	Adipose Nuclei	Adipose
6	chr1:179003800-179011200	Weak transcription	Thymus	Thymus
7	chr1:179003800-179025800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:179004000-179011000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:179004200-179010800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:179004200-179024200	Weak transcription	Liver	Liver
11	chr1:179004400-179012800	Weak transcription	Fetal Lung	lung
12	chr1:179004400-179013000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:179004400-179019200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:179004400-179024200	Weak transcription	Fetal Kidney	kidney
15	chr1:179004800-179011200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:179004800-179012200	Weak transcription	Spleen	Spleen
17	chr1:179004800-179024600	Weak transcription	Primary B cells from cord blood	blood
18	chr1:179005200-179016400	Weak transcription	Left Ventricle	heart
19	chr1:179006000-179024200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:179006400-179011400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:179006400-179016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:179006400-179024800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:179006400-179032400	Weak transcription	Esophagus	oesophagus
24	chr1:179006800-179024200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:179007000-179024200	Weak transcription	HUVEC	blood vessel
26	chr1:179007400-179016400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:179007600-179011200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:179007600-179011200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr1:179007600-179012000	Weak transcription	Lung	lung
30	chr1:179007600-179012200	Weak transcription	Pancreas	Pancrea
31	chr1:179007600-179024200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:179008000-179011200	Weak transcription	Ovary	ovary
33	chr1:179008000-179019200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:179008000-179033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:179008200-179013200	Weak transcription	Fetal Brain Female	brain
36	chr1:179008400-179016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:179008400-179021600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:179008400-179023600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:179008400-179033000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
41	chr1:179008600-179010800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:179008600-179011200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:179008600-179011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:179008600-179011200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:179008600-179011400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:179008600-179012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:179008600-179013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:179008600-179013800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:179008600-179016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr1:179008600-179016200	Weak transcription	NHLF	lung

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