Variant report

Variant	rs7538498
Chromosome Location	chr1:179030369-179030370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:179029337..179031830-chr1:179049243..179052010,3	MCF-7	breast:
2	chr1:178993725..178998652-chr1:179027770..179032614,10	K562	blood:
3	chr1:178989917..178991482-chr1:179028410..179031384,2	K562	blood:
4	chr1:179015153..179018084-chr1:179028632..179031488,3	K562	blood:
5	chr1:178993842..178996576-chr1:179029653..179032404,2	K562	blood:
6	chr1:179018984..179020903-chr1:179028534..179031025,2	MCF-7	breast:
7	chr1:179028816..179031241-chr1:179032306..179036401,3	MCF-7	breast:
8	chr1:178994863..178996962-chr1:179029418..179031852,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186283	Chromatin interaction
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10082052	0.86[CEU][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10913672	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11581232	0.81[AMR][1000 genomes]
rs2025584	0.84[JPT][hapmap]
rs2182102	0.82[AMR][1000 genomes]
rs2296377	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3813638	1.00[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4297249	0.81[JPT][hapmap]
rs4360489	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652344	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4652348	0.95[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6425512	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425515	0.82[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6697029	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7532578	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7544801	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179006400-179032400	Weak transcription	Esophagus	oesophagus
2	chr1:179008000-179033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:179008400-179033000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
5	chr1:179008600-179033000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:179008600-179035000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:179009400-179033000	Weak transcription	Gastric	stomach
10	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:179012200-179033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:179013200-179032600	Weak transcription	GM12878-XiMat	blood
13	chr1:179013400-179030400	Weak transcription	Fetal Stomach	stomach
14	chr1:179013400-179033200	Weak transcription	Thymus	Thymus
15	chr1:179016600-179032600	Weak transcription	Aorta	Aorta
16	chr1:179016800-179030400	Weak transcription	Psoas Muscle	Psoas
17	chr1:179016800-179033000	Weak transcription	Spleen	Spleen
18	chr1:179016800-179033200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:179017000-179033200	Weak transcription	Right Ventricle	heart
20	chr1:179018000-179033000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:179018800-179032800	Weak transcription	Brain Germinal Matrix	brain
22	chr1:179019800-179033200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:179021000-179032400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:179022800-179031400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:179022800-179033000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:179022800-179033000	Weak transcription	Brain Anterior Caudate	brain
27	chr1:179023000-179033400	Weak transcription	Stomach Mucosa	stomach
28	chr1:179024600-179033200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:179025000-179033000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
31	chr1:179025400-179033000	Weak transcription	Brain Substantia Nigra	brain
32	chr1:179025400-179033200	Weak transcription	Left Ventricle	heart
33	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
34	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:179025800-179032600	Weak transcription	Ovary	ovary
37	chr1:179025800-179032800	Weak transcription	Placenta	Placenta
38	chr1:179025800-179033000	Weak transcription	Brain Hippocampus Middle	brain
39	chr1:179025800-179033000	Weak transcription	Fetal Thymus	thymus
40	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
41	chr1:179026000-179030600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:179026000-179032000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:179026000-179032600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr1:179026000-179033000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:179026000-179033000	Weak transcription	Liver	Liver
46	chr1:179026000-179033000	Weak transcription	Fetal Brain Female	brain
47	chr1:179026000-179033200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:179026000-179033200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr1:179026200-179030800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr1:179026200-179031000	Weak transcription	Fetal Muscle Leg	muscle

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