Variant report

Variant	rs2182102
Chromosome Location	chr1:178974047-178974048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:178973042..178975916-chr1:178979965..178981961,3	K562	blood:
2	chr1:178971758..178974744-chr1:178976786..178978756,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10082052	0.82[AMR][1000 genomes]
rs10753189	0.90[ASN][1000 genomes]
rs10913672	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3813638	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4652344	0.88[AMR][1000 genomes]
rs4652348	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6425512	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6697029	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7532578	0.85[AMR][1000 genomes]
rs7538498	0.82[AMR][1000 genomes]
rs7544801	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv441722	chr1:178953746-178976729	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv825509	chr1:178963180-178975836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178971600-178974600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:178972000-178974200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr1:178972200-178975200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:178972400-178974600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr1:178972400-178976600	Weak transcription	A549	lung
6	chr1:178972400-178976600	Weak transcription	Osteobl	bone
7	chr1:178972400-178977800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:178972400-178986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:178972600-178974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:178972600-178976400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:178972600-178977800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:178972600-178978000	Weak transcription	Adipose Nuclei	Adipose
13	chr1:178972600-178981200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:178972800-178978000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:178973000-178976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:178973200-178977800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:178973200-178979600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:178973400-178980200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:178973400-178980200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:178973600-178976600	Weak transcription	Stomach Mucosa	stomach
21	chr1:178973600-178983200	Weak transcription	K562	blood
22	chr1:178973800-178976600	Weak transcription	HepG2	liver

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