Variant report

Variant	rs4652348
Chromosome Location	chr1:179003490-179003491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179000401..179003914-chr1:179016181..179018558,5	K562	blood:
2	chr1:179002394..179004367-chr1:179013512..179015956,3	K562	blood:
3	chr1:178998854..179000742-chr1:179002565..179004439,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10082052	0.94[CEU][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1046385	0.80[CEU][hapmap]
rs10798649	0.81[JPT][hapmap]
rs10913672	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11581232	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2025584	0.84[JPT][hapmap]
rs2182102	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2296377	0.86[AMR][1000 genomes]
rs3753533	0.81[JPT][hapmap]
rs3813638	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3820163	0.81[JPT][hapmap]
rs4360489	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4652344	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425512	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6425515	0.82[JPT][hapmap]
rs6697029	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532578	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7538498	0.95[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7544801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4652348	TOR3A	cis	Artery Tibial	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178996200-179009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:178996400-179006200	Weak transcription	Fetal Stomach	stomach
3	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:178996600-179004000	Weak transcription	Fetal Kidney	kidney
5	chr1:178997000-179005800	Weak transcription	Brain Substantia Nigra	brain
6	chr1:178997800-179004800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:178998200-179004800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:178998200-179004800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:178998200-179008600	Enhancers	Colon Smooth Muscle	Colon
10	chr1:178998400-179027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:178998600-179004200	Weak transcription	Pancreas	Pancrea
12	chr1:178998600-179006000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:178998600-179007600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:178998600-179008000	Weak transcription	Placenta	Placenta
15	chr1:178998800-179003600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:178998800-179005800	Weak transcription	Brain Angular Gyrus	brain
17	chr1:178999000-179009600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:178999600-179004400	Enhancers	Rectal Smooth Muscle	rectum
19	chr1:178999800-179004200	Weak transcription	Fetal Intestine Large	intestine
20	chr1:179000000-179004600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:179000000-179006200	Weak transcription	Fetal Intestine Small	intestine
22	chr1:179000600-179003600	Weak transcription	Liver	Liver
23	chr1:179000800-179004400	Enhancers	Osteobl	bone
24	chr1:179001000-179004600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:179001000-179004800	Enhancers	Psoas Muscle	Psoas
26	chr1:179001200-179008600	Enhancers	Primary B cells from peripheral blood	blood
27	chr1:179001200-179009600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr1:179001400-179003600	Enhancers	NHDF-Ad	bronchial
29	chr1:179001400-179007600	Weak transcription	Fetal Brain Female	brain
30	chr1:179001600-179004400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:179001600-179017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:179001800-179004000	Enhancers	Stomach Smooth Muscle	stomach
33	chr1:179001800-179008600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr1:179001800-179016200	Weak transcription	Aorta	Aorta
35	chr1:179002000-179019200	Weak transcription	Adipose Nuclei	Adipose
36	chr1:179002200-179004600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:179002200-179005800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:179002200-179007600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:179002400-179003800	Weak transcription	Fetal Heart	heart
40	chr1:179002800-179004600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr1:179002800-179004800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:179002800-179005000	Enhancers	Small Intestine	intestine
43	chr1:179002800-179008600	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr1:179003000-179003600	Enhancers	Ovary	ovary
45	chr1:179003000-179003600	Enhancers	Right Ventricle	heart
46	chr1:179003000-179003800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:179003000-179003800	Enhancers	Right Atrium	heart
48	chr1:179003000-179004200	Enhancers	HSMMtube	muscle
49	chr1:179003000-179004200	Enhancers	HUVEC	blood vessel
50	chr1:179003000-179004600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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