Variant report

Variant	rs3753533
Chromosome Location	chr1:179033987-179033988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179020191..179022614-chr1:179033544..179035749,2	K562	blood:
2	chr1:179028816..179031241-chr1:179032306..179036401,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10798649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798650	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798651	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10913682	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12021551	0.80[AMR][1000 genomes]
rs1220	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12743735	0.84[ASN][1000 genomes]
rs2025584	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3766626	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3766628	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3820163	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4297249	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4322196	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4360490	0.81[AMR][1000 genomes]
rs4652348	0.81[JPT][hapmap]
rs4652351	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61823786	0.86[EUR][1000 genomes]
rs6425512	0.81[JPT][hapmap]
rs6425513	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7515519	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7526438	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544801	0.81[JPT][hapmap]
rs7549040	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912758	0.88[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9283394	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9725887	0.83[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs9727621	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9727648	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3753533	TOR3A	cis	Artery Tibial	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
2	chr1:179008600-179035000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
7	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
8	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
11	chr1:179026200-179038400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:179027800-179036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:179027800-179042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:179028000-179039000	Strong transcription	Primary T cells from cord blood	blood
16	chr1:179028400-179036400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:179029200-179039600	Strong transcription	Fetal Intestine Large	intestine
20	chr1:179029600-179043200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:179030000-179034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:179030200-179034400	Strong transcription	Fetal Intestine Small	intestine
23	chr1:179030200-179038200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr1:179030400-179035200	Strong transcription	Fetal Stomach	stomach
25	chr1:179030800-179038400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr1:179031000-179038400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:179031200-179039600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:179031400-179038000	Strong transcription	K562	blood
29	chr1:179031800-179035200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:179032000-179036400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:179032000-179036400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr1:179032400-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:179032400-179039000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:179032600-179034400	Strong transcription	GM12878-XiMat	blood
35	chr1:179032600-179035400	Strong transcription	Ovary	ovary
36	chr1:179032600-179036200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:179032600-179036200	Strong transcription	Aorta	Aorta
38	chr1:179032600-179037600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:179032600-179038400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:179032600-179038400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr1:179032600-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:179032600-179043200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:179032600-179043200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr1:179032800-179034800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:179032800-179035000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:179032800-179035600	Strong transcription	NH-A	brain
47	chr1:179032800-179036000	Strong transcription	Primary B cells from cord blood	blood
48	chr1:179032800-179037000	Strong transcription	Brain Germinal Matrix	brain
49	chr1:179032800-179038200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:179032800-179038400	Strong transcription	Placenta	Placenta

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