Variant report

Variant	rs61823786
Chromosome Location	chr1:178995521-178995522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155163254..155164121-chr1:178995131..178996078,2	Hela-S3	cervix:
2	chr1:178994647..178996585-chr1:179051040..179053373,3	MCF-7	breast:
3	chr1:178994809..178995971-chr5:179049840..179051236,5	Hela-S3	cervix:
4	chr1:178994037..178996559-chr6:26216842..26218993,2	MCF-7	breast:
5	chr1:178510389..178513760-chr1:178993228..178995789,4	MCF-7	breast:
6	chr1:178993182..178999783-chr1:179045102..179052535,14	MCF-7	breast:
7	chr1:178995255..178995818-chr15:40986799..40987776,2	Hela-S3	cervix:
8	chr1:178995239..178996084-chr15:59949313..59949827,2	Hela-S3	cervix:
9	chr1:178995149..178995754-chr13:31039556..31040487,2	Hela-S3	cervix:
10	chr1:178995068..178997335-chr1:179038354..179040451,4	K562	blood:
11	chr1:178693031..178696022-chr1:178993845..178996341,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273062	Chromatin interaction
ENSG00000116191	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000184909	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000245849	Chromatin interaction
ENSG00000140307	Chromatin interaction
ENSG00000213057	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000186283	Chromatin interaction
ENSG00000169045	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10798649	0.88[EUR][1000 genomes]
rs10913682	0.87[EUR][1000 genomes]
rs3753533	0.86[EUR][1000 genomes]
rs3766628	0.84[EUR][1000 genomes]
rs4297249	0.83[EUR][1000 genomes]
rs4652344	0.83[ASN][1000 genomes]
rs6425513	0.87[EUR][1000 genomes]
rs7515519	0.84[EUR][1000 genomes]
rs7526438	0.85[EUR][1000 genomes]
rs7532578	0.84[ASN][1000 genomes]
rs7549040	0.86[EUR][1000 genomes]
rs9283394	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420967	chr1:178993954-178996502	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
2	esv3396952	chr1:178994279-178996377	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61823786	TOR3A	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178994000-178996200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr1:178994000-178996400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:178994200-178996000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr1:178994200-178996000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:178994200-178996000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:178994200-178996000	Active TSS	Brain Hippocampus Middle	brain
7	chr1:178994200-178996000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:178994200-178996000	Active TSS	Rectal Smooth Muscle	rectum
9	chr1:178994200-178996200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:178994200-178996200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:178994200-178996200	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr1:178994200-178996200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:178994200-178996200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:178994200-178996200	Active TSS	Fetal Lung	lung
15	chr1:178994200-178996200	Active TSS	Stomach Smooth Muscle	stomach
16	chr1:178994200-178996400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr1:178994200-178996400	Active TSS	Aorta	Aorta
18	chr1:178994200-178996600	Active TSS	Colonic Mucosa	Colon
19	chr1:178994200-178996800	Active TSS	Psoas Muscle	Psoas
20	chr1:178994200-178996800	Active TSS	NHDF-Ad	bronchial
21	chr1:178994400-178995600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr1:178994400-178996000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:178994400-178996000	Active TSS	Primary T cells from cord blood	blood
24	chr1:178994400-178996000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:178994400-178996000	Active TSS	Brain Angular Gyrus	brain
26	chr1:178994400-178996000	Active TSS	Brain Anterior Caudate	brain
27	chr1:178994400-178996000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr1:178994400-178996000	Active TSS	Fetal Kidney	kidney
29	chr1:178994400-178996200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:178994400-178996200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:178994400-178996200	Active TSS	Muscle Satellite Cultured Cells	--
32	chr1:178994400-178996200	Active TSS	Gastric	stomach
33	chr1:178994400-178996200	Active TSS	Left Ventricle	heart
34	chr1:178994400-178996200	Active TSS	Lung	lung
35	chr1:178994400-178996200	Active TSS	Pancreas	Pancrea
36	chr1:178994400-178996200	Active TSS	NHEK	skin
37	chr1:178994400-178996400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr1:178994400-178996400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr1:178994400-178996400	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr1:178994400-178996400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:178994400-178996400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr1:178994400-178996400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:178994400-178996400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:178994400-178996400	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr1:178994400-178996600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:178994400-178996600	Active TSS	Ovary	ovary
47	chr1:178994400-178996800	Active TSS	Right Ventricle	heart
48	chr1:178994400-178997000	Active TSS	HMEC	breast
49	chr1:178994600-178995600	Active TSS	Fetal Brain Female	brain
50	chr1:178994600-178995800	Active TSS	Fetal Muscle Leg	muscle

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