The 2.0 version of rSNPBase

Variant report

Variant rs7549040
Chromosome Location chr1:179026567-179026568
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178998400-179027400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:179006400-179032400 Weak transcription Esophagus oesophagus
3 chr1:179008000-179033000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr1:179008400-179033000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr1:179008400-179041000 Weak transcription Small Intestine intestine
6 chr1:179008600-179033000 Weak transcription Brain Angular Gyrus brain
7 chr1:179008600-179035000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:179008600-179049800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:179008600-179049800 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:179009400-179033000 Weak transcription Gastric stomach
11 chr1:179009600-179050400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:179012200-179033000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:179012600-179027600 Weak transcription Lung lung
14 chr1:179013200-179027400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:179013200-179027400 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:179013200-179032600 Weak transcription GM12878-XiMat blood
17 chr1:179013400-179030200 Weak transcription Fetal Intestine Small intestine
18 chr1:179013400-179030400 Weak transcription Fetal Stomach stomach
19 chr1:179013400-179033200 Weak transcription Thymus Thymus
20 chr1:179016600-179032600 Weak transcription Aorta Aorta
21 chr1:179016800-179027400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:179016800-179027600 Weak transcription Pancreas Pancrea
23 chr1:179016800-179030400 Weak transcription Psoas Muscle Psoas
24 chr1:179016800-179033000 Weak transcription Spleen Spleen
25 chr1:179016800-179033200 Weak transcription Rectal Smooth Muscle rectum
26 chr1:179017000-179026800 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:179017000-179027400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:179017000-179027400 Weak transcription NH-A brain
29 chr1:179017000-179033200 Weak transcription Right Ventricle heart
30 chr1:179017200-179029800 Weak transcription HepG2 liver
31 chr1:179018000-179033000 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:179018800-179032800 Weak transcription Brain Germinal Matrix brain
33 chr1:179019800-179027600 Weak transcription Colon Smooth Muscle Colon
34 chr1:179019800-179033200 Weak transcription Brain Cingulate Gyrus brain
35 chr1:179021000-179032400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:179022600-179027600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr1:179022800-179031400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:179022800-179033000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr1:179022800-179033000 Weak transcription Brain Anterior Caudate brain
40 chr1:179023000-179033400 Weak transcription Stomach Mucosa stomach
41 chr1:179023600-179026600 Strong transcription Fetal Adrenal Gland Adrenal Gland
42 chr1:179023600-179026800 Strong transcription Primary T helper cells fromperipheralblood blood
43 chr1:179024000-179027800 Strong transcription Primary T cells fromperipheralblood blood
44 chr1:179024200-179027000 Strong transcription Stomach Smooth Muscle stomach
45 chr1:179024600-179033200 Weak transcription Primary neutrophils fromperipheralblood blood
46 chr1:179024800-179027600 Weak transcription Hela-S3 cervix
47 chr1:179025000-179027000 ZNF genes & repeats A549 lung
48 chr1:179025000-179033000 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr1:179025000-179050200 Weak transcription HUVEC blood vessel
50 chr1:179025200-179026600 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015