Variant report

Variant	rs11582128
Chromosome Location	chr1:155003954-155003955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1061122	1.00[JPT][hapmap]
rs10908443	1.00[JPT][hapmap]
rs11264302	1.00[JPT][hapmap]
rs11264303	1.00[JPT][hapmap]
rs1218554	1.00[JPT][hapmap]
rs1218584	1.00[JPT][hapmap]
rs1218585	1.00[JPT][hapmap]
rs1218587	1.00[JPT][hapmap]
rs1218589	1.00[JPT][hapmap]
rs1611770	1.00[JPT][hapmap]
rs2878412	1.00[JPT][hapmap]
rs4845397	1.00[JPT][hapmap]
rs4845402	1.00[JPT][hapmap]
rs6660884	1.00[JPT][hapmap]
rs6682335	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11582128	ETV3	cis	parietal	SCAN
rs11582128	ANXA9	cis	cerebellum	SCAN
rs11582128	LCE1B	cis	cerebellum	SCAN
rs11582128	PI4KB	cis	parietal	SCAN
rs11582128	JTB	cis	parietal	SCAN
rs11582128	PSMB4	cis	parietal	SCAN
rs11582128	ACP2	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154990600-155011200	Weak transcription	Right Atrium	heart
2	chr1:154990800-155016400	Weak transcription	Spleen	Spleen
3	chr1:154999200-155010800	Weak transcription	Gastric	stomach
4	chr1:154999400-155009200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:155001800-155006600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:155003000-155004200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:155003600-155008800	Weak transcription	Placenta	Placenta
8	chr1:155003800-155006800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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