Variant report

Variant	rs6660884
Chromosome Location	chr1:155026114-155026115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:155025925-155026369	T-47D	breast:	n/a	n/a
2	POLR2A	chr1:155024112-155026330	HUVEC	blood vessel:	n/a	n/a
3	ESR1	chr1:155025965-155026287	T-47D	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154968418..154978887-chr1:155021582..155027516,28	MCF-7	breast:
2	chr1:154944682..154948805-chr1:155021065..155026491,10	K562	blood:
3	chr1:155022054..155026411-chr1:155097710..155103379,8	MCF-7	breast:
4	chr1:154941816..154947838-chr1:155021873..155026372,7	K562	blood:
5	chr1:154932678..154935762-chr1:155021459..155026414,6	MCF-7	breast:
6	chr1:154954181..154957294-chr1:155022241..155026637,5	MCF-7	breast:
7	chr1:154972444..154977644-chr1:155020190..155026477,10	K562	blood:
8	chr1:155013927..155032770-chr1:155044175..155061131,53	MCF-7	breast:
9	chr1:154993321..154996248-chr1:155024180..155027135,2	K562	blood:

No data

Variant related genes	Relation type
ADAM15	TF binding region
ENSG00000271380	Chromatin interaction
ENSG00000163348	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000173207	Chromatin interaction
ENSG00000264349	Chromatin interaction
ENSG00000143590	Chromatin interaction
ENSG00000160685	Chromatin interaction
ENSG00000160688	Chromatin interaction
ENSG00000160691	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1061122	1.00[JPT][hapmap]
rs11264302	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11264303	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11582128	1.00[JPT][hapmap]
rs1218584	1.00[JPT][hapmap]
rs1218585	1.00[JPT][hapmap]
rs1218587	1.00[JPT][hapmap]
rs1218589	1.00[JPT][hapmap]
rs1611770	1.00[JPT][hapmap]
rs2878412	1.00[JPT][hapmap]
rs4845397	1.00[JPT][hapmap]
rs4845402	1.00[JPT][hapmap]
rs6427128	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6660884	ADAM15	cis	brain	BrainEAC

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155022800-155026200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:155024600-155026400	Enhancers	Spleen	Spleen
3	chr1:155024800-155026200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:155024800-155028200	Weak transcription	Aorta	Aorta
5	chr1:155025000-155026200	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:155025000-155026400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:155025000-155026600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:155025000-155026600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:155025000-155026600	Enhancers	Placenta	Placenta
10	chr1:155025000-155034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:155025200-155026200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:155025200-155026200	Enhancers	Primary B cells from cord blood	blood
13	chr1:155025200-155026200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:155025200-155026400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:155025200-155026400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:155025200-155026400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:155025200-155026400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:155025200-155026400	Weak transcription	Ovary	ovary
19	chr1:155025200-155026400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:155025200-155026400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:155025200-155026400	Transcr. at gene 5' and 3'	NHEK	skin
22	chr1:155025200-155026600	Enhancers	Pancreas	Pancrea
23	chr1:155025200-155028200	Weak transcription	Liver	Liver
24	chr1:155025200-155028200	Weak transcription	HSMMtube	muscle
25	chr1:155025200-155028200	Weak transcription	NHLF	lung
26	chr1:155025200-155028400	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:155025200-155028600	Weak transcription	Brain Angular Gyrus	brain
28	chr1:155025200-155028600	Weak transcription	Small Intestine	intestine
29	chr1:155025200-155034000	Weak transcription	NH-A	brain
30	chr1:155025200-155034200	Weak transcription	Psoas Muscle	Psoas
31	chr1:155025200-155034200	Weak transcription	NHDF-Ad	bronchial
32	chr1:155025400-155026200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:155025400-155026200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr1:155025400-155026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:155025400-155026400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:155025400-155026400	Weak transcription	Gastric	stomach
37	chr1:155025400-155026600	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:155025400-155027000	Enhancers	Primary hematopoietic stem cells	blood
39	chr1:155025400-155027000	Weak transcription	Osteobl	bone
40	chr1:155025400-155028200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:155025400-155028200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:155025400-155028200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:155025400-155028600	Weak transcription	HepG2	liver
44	chr1:155025400-155028800	Weak transcription	Brain Germinal Matrix	brain
45	chr1:155025400-155029000	Weak transcription	Fetal Brain Female	brain
46	chr1:155025400-155034000	Weak transcription	GM12878-XiMat	blood
47	chr1:155025600-155026200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr1:155025600-155026200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr1:155025600-155026200	Genic enhancers	Duodenum Mucosa	Duodenum
50	chr1:155025600-155026200	Weak transcription	Left Ventricle	heart

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