Variant report

Variant	rs1611770
Chromosome Location	chr1:155160270-155160271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155153389-155161077	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr1:155153520-155161231	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr1:155159183-155160440	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:155096309..155104200-chr1:155157595..155166389,23	MCF-7	breast:
2	chr1:155160177..155166575-chr1:155191666..155199927,14	MCF-7	breast:
3	chr1:155092552..155095095-chr1:155160179..155163739,4	MCF-7	breast:
4	chr1:155157869..155162042-chr1:155196023..155198721,3	MCF-7	breast:

Variant related genes	Relation type
MIR92B	TF binding region
MUC1	TF binding region
ENSG00000273088	TF binding region
ENSG00000169242	Chromatin interaction
ENSG00000160766	Chromatin interaction
ENSG00000202027	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11264302	1.00[JPT][hapmap]
rs11264303	1.00[JPT][hapmap]
rs11465207	1.00[MEX][hapmap]
rs11582128	1.00[JPT][hapmap]
rs11809549	0.80[AFR][1000 genomes]
rs34618533	1.00[TSI][hapmap]
rs4472748	1.00[JPT][hapmap]
rs4845402	1.00[JPT][hapmap]
rs6660884	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv464084	chr1:155082298-155194980	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases
4	nsv547961	chr1:155082298-155194980	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases
5	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
6	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
7	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
8	nsv470741	chr1:155115260-155230131	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
9	nsv1010146	chr1:155119096-155201064	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
10	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
11	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
12	nsv872458	chr1:155146102-155180466	Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	316 gene(s)	inside rSNPs	diseases
13	nsv872459	chr1:155149718-155169633	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
14	nsv527682	chr1:155149718-155197462	Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	361 gene(s)	inside rSNPs	diseases
15	nsv872460	chr1:155151493-155163181	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
16	nsv872461	chr1:155151493-155169633	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
17	nsv872462	chr1:155151493-155172177	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
18	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
19	nsv872463	chr1:155155731-155169633	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
20	nsv872464	chr1:155157853-155163181	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
21	nsv872465	chr1:155157853-155169633	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
22	nsv547962	chr1:155158414-155160941	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
23	esv3338339	chr1:155159128-155163626	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
24	esv3381155	chr1:155160128-155162626	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155146600-155163000	Weak transcription	Aorta	Aorta
2	chr1:155149600-155162000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:155149600-155162600	Weak transcription	Small Intestine	intestine
4	chr1:155149600-155162800	Weak transcription	NHDF-Ad	bronchial
5	chr1:155149800-155162000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:155149800-155162200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:155150000-155162000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:155150000-155163000	Weak transcription	Fetal Brain Male	brain
9	chr1:155150200-155162400	Weak transcription	Dnd41	blood
10	chr1:155150400-155161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:155150600-155162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:155150800-155161800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:155151000-155162000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:155151200-155162000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:155152200-155162800	Weak transcription	Osteobl	bone
16	chr1:155152400-155163000	Weak transcription	HUVEC	blood vessel
17	chr1:155152600-155161800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:155152600-155161800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:155152600-155162000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:155152600-155162200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:155152600-155162400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:155152600-155162800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:155152600-155163000	Weak transcription	Brain Substantia Nigra	brain
24	chr1:155152800-155162000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:155152800-155162200	Weak transcription	Fetal Thymus	thymus
26	chr1:155152800-155162400	Weak transcription	Brain Anterior Caudate	brain
27	chr1:155152800-155163000	Weak transcription	NH-A	brain
28	chr1:155153000-155161800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:155153000-155162400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:155154800-155162200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:155155000-155162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:155155000-155162200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:155155000-155162800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:155155200-155161800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:155155200-155162000	Weak transcription	NHLF	lung
36	chr1:155155400-155162200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:155155400-155162400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:155156400-155161000	Enhancers	Pancreas	Pancrea
39	chr1:155156400-155161800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:155156600-155162800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:155156600-155163000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:155156800-155163000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:155157000-155162000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:155157000-155162000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:155157000-155163000	Weak transcription	Brain Angular Gyrus	brain
46	chr1:155157200-155160400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:155157200-155161800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:155157600-155162000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:155157600-155162200	Weak transcription	Primary T cells from cord blood	blood
50	chr1:155157800-155160600	Enhancers	H1 Cell Line	embryonic stem cell

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