Variant report

Variant	rs11584071
Chromosome Location	chr1:159772442-159772443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11585055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11585323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586456	1.00[EUR][1000 genomes]
rs11586557	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11586788	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587247	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12077947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501344	1.00[EUR][1000 genomes]
rs60602471	0.89[AFR][1000 genomes]
rs74124721	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159769000-159773200	Weak transcription	Placenta	Placenta
2	chr1:159769800-159774400	Weak transcription	NHDF-Ad	bronchial
3	chr1:159770000-159774000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:159770400-159773600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:159770600-159772800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:159770600-159774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:159771000-159776600	Weak transcription	Primary T cells from cord blood	blood
8	chr1:159771400-159773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:159771600-159774600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:159771600-159774600	Enhancers	Spleen	Spleen
11	chr1:159771800-159774000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr1:159772000-159772600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:159772200-159772800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:159772200-159773200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr1:159772200-159773200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:159772400-159773200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:159772400-159773400	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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