Variant report

Variant	rs74124721
Chromosome Location	chr1:159774583-159774584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11584071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11585323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586456	1.00[EUR][1000 genomes]
rs11586557	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11586788	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587247	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12077947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501344	1.00[EUR][1000 genomes]
rs60602471	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159771000-159776600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:159771600-159774600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:159771600-159774600	Enhancers	Spleen	Spleen
4	chr1:159772800-159777400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:159772800-159778800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:159773400-159774800	Enhancers	Right Atrium	heart
7	chr1:159773400-159776800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:159773600-159775200	Enhancers	Fetal Lung	lung
9	chr1:159773600-159775800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:159773800-159775400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:159773800-159775400	Enhancers	Ovary	ovary
12	chr1:159774000-159774600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:159774000-159776400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:159774400-159775200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:159774400-159775200	Enhancers	HMEC	breast
16	chr1:159774400-159775400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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