Variant report

Variant	rs11585323
Chromosome Location	chr1:159769735-159769736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159767764..159770005-chr1:159860953..159862581,56	MCF-7	breast:
2	chr1:159767618..159769808-chr1:159861062..159862249,21	MCF-7	breast:
3	chr1:159768768..159770539-chr1:159892719..159895162,2	K562	blood:
4	chr1:159767829..159770101-chr1:159851843..159854552,2	MCF-7	breast:
5	chr1:159767187..159770392-chr1:159770720..159774821,3	K562	blood:

Variant related genes	Relation type
ENSG00000158710	Chromatin interaction
ENSG00000181036	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11584071	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585210	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11586456	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs11586557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11586788	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587247	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12077947	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2494495	1.00[JPT][hapmap]
rs2501343	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2501344	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs74124721	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159765600-159770000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:159768400-159771400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:159768600-159770200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:159768800-159770000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr1:159768800-159770000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:159768800-159770200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:159768800-159770200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:159768800-159770400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:159768800-159770600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:159768800-159770600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:159768800-159770600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:159768800-159770800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:159768800-159770800	Enhancers	Fetal Thymus	thymus
14	chr1:159768800-159771000	Enhancers	Primary T cells from cord blood	blood
15	chr1:159768800-159771200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:159768800-159771400	Enhancers	Thymus	Thymus
17	chr1:159769000-159769800	Enhancers	NHDF-Ad	bronchial
18	chr1:159769000-159770600	Enhancers	GM12878-XiMat	blood
19	chr1:159769000-159770600	Enhancers	Osteobl	bone
20	chr1:159769000-159770800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:159769000-159771000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr1:159769000-159773200	Weak transcription	Placenta	Placenta
23	chr1:159769600-159770000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:159769600-159770200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:159769600-159770400	Enhancers	Duodenum Mucosa	Duodenum
26	chr1:159769600-159770600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr1:159769600-159770800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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