Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800494	0.88[JPT][hapmap]
rs10800495	0.88[JPT][hapmap]
rs10919284	0.86[JPT][hapmap]
rs10919323	0.89[ASN][1000 genomes]
rs11583139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11803298	0.88[JPT][hapmap]
rs12123693	0.88[JPT][hapmap]
rs12126204	0.88[JPT][hapmap]
rs12144417	0.88[JPT][hapmap]
rs12146137	0.88[JPT][hapmap]
rs12750962	0.86[JPT][hapmap]
rs1330373	0.87[ASN][1000 genomes]
rs13374766	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1360293	0.88[JPT][hapmap]
rs17349894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012365	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4656729	0.88[JPT][hapmap]
rs4656737	1.00[JPT][hapmap]
rs6427233	0.88[JPT][hapmap]
rs6657512	0.88[JPT][hapmap]
rs6670191	0.88[JPT][hapmap]
rs6674620	0.88[JPT][hapmap]
rs6701391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688100	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv3454	chr1:170134880-170149447	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11585754	RCSD1	cis	cerebellum	SCAN
rs11585754	PHYHD1	trans	cerebellum	SCAN
rs11585754	BRP44	cis	parietal	SCAN
rs11585754	CD247	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: