The 2.0 version of rSNPBase

Variant report

Variant rs12146137
Chromosome Location chr1:170037624-170037625
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:170018200-170042400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:170018800-170040600 Weak transcription Aorta Aorta
4 chr1:170019000-170041400 Weak transcription Colon Smooth Muscle Colon
5 chr1:170019000-170042600 Weak transcription Thymus Thymus
6 chr1:170019200-170042400 Weak transcription Fetal Lung lung
7 chr1:170024400-170037800 Weak transcription Primary T cells from cord blood blood
8 chr1:170032800-170040600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:170032800-170042400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:170032800-170042600 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:170033800-170040800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:170033800-170042400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:170034200-170040200 Weak transcription Brain Germinal Matrix brain
14 chr1:170035800-170038600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:170035800-170038800 Enhancers Primary T helper cells PMA-I stimulated --
16 chr1:170036000-170037800 Enhancers Primary T regulatory cells fromperipheralblood blood
17 chr1:170036400-170037800 Enhancers Fetal Heart heart
18 chr1:170036400-170042200 Weak transcription NHEK skin
19 chr1:170036600-170038400 Enhancers Osteobl bone
20 chr1:170036600-170038800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
21 chr1:170036600-170043000 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr1:170036800-170039200 Enhancers Primary T helper cells fromperipheralblood blood
23 chr1:170036800-170042600 Weak transcription Rectal Smooth Muscle rectum
24 chr1:170037000-170038000 Enhancers NHLF lung
25 chr1:170037000-170038200 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:170037000-170038400 Weak transcription HMEC breast
27 chr1:170037000-170038600 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr1:170037000-170039000 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:170037000-170039400 Weak transcription Fetal Brain Female brain
30 chr1:170037000-170039600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:170037000-170040600 Weak transcription Pancreas Pancrea
32 chr1:170037000-170041600 Weak transcription Right Ventricle heart
33 chr1:170037000-170042600 Weak transcription Brain Cingulate Gyrus brain
34 chr1:170037000-170042800 Weak transcription Right Atrium heart
35 chr1:170037000-170043000 Weak transcription Left Ventricle heart
36 chr1:170037000-170043200 Weak transcription Small Intestine intestine
37 chr1:170037200-170037800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:170037200-170042000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:170037200-170042600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:170037200-170042600 Weak transcription Duodenum Mucosa Duodenum
41 chr1:170037200-170042600 Weak transcription Fetal Thymus thymus
42 chr1:170037200-170042600 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr1:170037200-170042600 Weak transcription HepG2 liver
44 chr1:170037200-170043200 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:170037400-170037800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:170037400-170038400 Active TSS GM12878-XiMat blood
47 chr1:170037400-170038600 Enhancers Primary hematopoietic stem cells blood
48 chr1:170037400-170042000 Weak transcription K562 blood
49 chr1:170037400-170043000 Enhancers Primary T helper naive cells fromperipheralblood blood
50 chr1:170037600-170037800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015