Variant report

Variant	rs11586482
Chromosome Location	chr1:159119485-159119486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11580888	0.87[EUR][1000 genomes]
rs11582615	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28620204	0.92[ASN][1000 genomes]
rs3026921	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3026922	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3026925	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026935	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264463	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59719871	0.94[AMR][1000 genomes]
rs61400225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863039	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1804803	chr1:159117690-159123862	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv20254	chr1:159118351-159123995	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159112600-159132800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:159117600-159124600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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