Variant report

Variant	rs59719871
Chromosome Location	chr1:159090099-159090100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11582615	0.84[ASN][1000 genomes]
rs11586482	0.94[AMR][1000 genomes]
rs2518569	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518570	0.95[ASN][1000 genomes]
rs2814780	0.99[EUR][1000 genomes]
rs3026921	0.82[ASN][1000 genomes]
rs3026922	0.84[ASN][1000 genomes]
rs3026925	0.94[AMR][1000 genomes]
rs3026935	0.94[AMR][1000 genomes]
rs61400225	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159084400-159090200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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