Variant report

Variant	rs3026925
Chromosome Location	chr1:159111112-159111113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11580888	0.90[EUR][1000 genomes]
rs11582615	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11586482	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620204	0.92[ASN][1000 genomes]
rs3026921	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3026922	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3026935	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264463	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59719871	0.94[AMR][1000 genomes]
rs61400225	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863039	0.98[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159110200-159111600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr1:159110200-159113400	Active TSS	Fetal Brain Female	brain
3	chr1:159110400-159111800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:159110600-159111400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:159110600-159112800	Active TSS	Fetal Brain Male	brain
6	chr1:159110800-159112200	Active TSS	Brain Germinal Matrix	brain
7	chr1:159111000-159111200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr1:159111000-159111200	Bivalent Enhancer	A549	lung
9	chr1:159111000-159111400	Enhancers	HMEC	breast
10	chr1:159111000-159111600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr1:159111000-159112000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr1:159111000-159112400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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