Variant report

Variant	rs11587664
Chromosome Location	chr1:86714346-86714347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11161752	0.87[CEU][hapmap]
rs11161755	0.87[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs11161756	0.85[CEU][hapmap]
rs11161757	0.87[CEU][hapmap]
rs11161758	0.82[CEU][hapmap]
rs11161759	0.85[CEU][hapmap]
rs11579660	1.00[CEU][hapmap]
rs12072489	0.87[CEU][hapmap]
rs12076366	0.87[CEU][hapmap];0.83[GIH][hapmap]
rs1336052	1.00[CEU][hapmap]
rs1507276	0.87[CEU][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap]
rs1507282	0.87[CEU][hapmap];0.84[TSI][hapmap]
rs1507283	0.86[CEU][hapmap]
rs17128866	1.00[CEU][hapmap]
rs2892908	0.87[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs4631724	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs6660694	0.86[CEU][hapmap]
rs6674512	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009092	chr1:86532988-86724805	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv535024	chr1:86532988-86724805	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830481	chr1:86550274-86737290	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86713800-86714400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:86713800-86714400	Enhancers	Psoas Muscle	Psoas
3	chr1:86713800-86714400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:86713800-86714400	Enhancers	NHDF-Ad	bronchial
5	chr1:86713800-86715000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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