Variant report

Variant	rs11587707
Chromosome Location	chr1:146707186-146707187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:146694787..146699847-chr1:146706639..146711306,10	MCF-7	breast:
2	chr1:146624878..146626860-chr1:146707008..146708792,2	K562	blood:
3	chr1:146642484..146645214-chr1:146706484..146708315,2	K562	blood:
4	chr1:146704247..146709929-chr1:146710011..146715268,7	K562	blood:

Variant related genes	Relation type
ENSG00000273071	Chromatin interaction
ENSG00000131781	Chromatin interaction
ENSG00000131791	Chromatin interaction
ENSG00000236806	Chromatin interaction
ENSG00000237188	Chromatin interaction
ENSG00000131778	Chromatin interaction

Extended variants
information (count: 189 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10494242	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10494243	1.00[ASW][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs10494244	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs10900325	0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11239944	0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11239945	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11239946	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11239947	0.97[ASN][1000 genomes]
rs11239964	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11579626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11585178	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11585180	0.93[ASN][1000 genomes]
rs11586665	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11587333	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11588753	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12402309	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12403141	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs12404113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12405240	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12568866	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17355733	0.82[AFR][1000 genomes]
rs17355740	0.82[AFR][1000 genomes]
rs17355768	0.82[AFR][1000 genomes]
rs17355789	0.82[AFR][1000 genomes]
rs17355796	0.82[AFR][1000 genomes]
rs17355817	0.82[AFR][1000 genomes]
rs17355844	0.89[AFR][1000 genomes]
rs17355858	0.89[AFR][1000 genomes]
rs17355899	0.89[AFR][1000 genomes]
rs17355913	0.89[AFR][1000 genomes]
rs17355927	0.89[AFR][1000 genomes]
rs17355962	0.89[AFR][1000 genomes]
rs17356024	1.00[ASW][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17356031	0.89[AFR][1000 genomes]
rs17359851	1.00[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17359865	0.82[AFR][1000 genomes]
rs17359879	0.82[AFR][1000 genomes]
rs17360003	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17360031	0.89[AFR][1000 genomes]
rs17360059	0.89[AFR][1000 genomes]
rs17360066	0.89[AFR][1000 genomes]
rs1932979	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2120003	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2165743	0.93[ASN][1000 genomes]
rs2275249	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297752	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2354432	0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28381176	0.83[AFR][1000 genomes]
rs28381180	0.89[AFR][1000 genomes]
rs28381181	0.89[AFR][1000 genomes]
rs28381183	0.89[AFR][1000 genomes]
rs28381188	0.89[AFR][1000 genomes]
rs28381190	0.89[AFR][1000 genomes]
rs28381193	0.89[AFR][1000 genomes]
rs28381194	0.83[AFR][1000 genomes]
rs28381200	0.89[AFR][1000 genomes]
rs28381203	0.82[AFR][1000 genomes]
rs28381205	0.89[AFR][1000 genomes]
rs28381206	0.83[AFR][1000 genomes]
rs28381209	0.89[AFR][1000 genomes]
rs28381230	0.82[AFR][1000 genomes]
rs28706431	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34838459	0.82[AFR][1000 genomes]
rs3737845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3737848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3766524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3820130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41295821	0.82[AFR][1000 genomes]
rs41312712	0.82[AFR][1000 genomes]
rs41480846	0.89[AFR][1000 genomes]
rs55653839	0.82[AFR][1000 genomes]
rs55710129	0.82[AFR][1000 genomes]
rs55918563	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56047816	0.89[AFR][1000 genomes]
rs56079929	0.82[AFR][1000 genomes]
rs56182581	0.82[AFR][1000 genomes]
rs56400874	0.89[AFR][1000 genomes]
rs56410162	0.82[AFR][1000 genomes]
rs57078845	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57570045	0.82[AFR][1000 genomes]
rs59180647	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59606861	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59689207	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62623392	0.82[AFR][1000 genomes]
rs62623395	0.82[AFR][1000 genomes]
rs6593751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66486822	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6658763	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6659191	1.00[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6665580	1.00[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6665934	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6668865	1.00[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6674519	0.89[AFR][1000 genomes]
rs6674643	0.89[AFR][1000 genomes]
rs6677679	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6681389	0.89[AFR][1000 genomes]
rs6683243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6684454	1.00[ASW][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6685775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6689243	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689934	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6690541	0.82[AFR][1000 genomes]
rs6694347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68080346	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72691008	1.00[ASN][1000 genomes]
rs72692962	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72706501	0.82[AFR][1000 genomes]
rs72708503	0.82[AFR][1000 genomes]
rs72708504	0.82[AFR][1000 genomes]
rs72708505	0.82[AFR][1000 genomes]
rs72708508	0.82[AFR][1000 genomes]
rs72708509	0.82[AFR][1000 genomes]
rs72708510	0.82[AFR][1000 genomes]
rs72708511	0.82[AFR][1000 genomes]
rs72708514	0.82[AFR][1000 genomes]
rs72708515	0.82[AFR][1000 genomes]
rs72708517	0.82[AFR][1000 genomes]
rs72708520	0.82[AFR][1000 genomes]
rs72708527	0.82[AFR][1000 genomes]
rs72708529	0.82[AFR][1000 genomes]
rs72708530	0.82[AFR][1000 genomes]
rs72708537	0.82[AFR][1000 genomes]
rs72708538	0.82[AFR][1000 genomes]
rs72708539	0.82[AFR][1000 genomes]
rs72708544	0.82[AFR][1000 genomes]
rs72708545	0.82[AFR][1000 genomes]
rs72708547	0.82[AFR][1000 genomes]
rs72708548	0.82[AFR][1000 genomes]
rs72708553	0.82[AFR][1000 genomes]
rs72708554	0.82[AFR][1000 genomes]
rs72708555	0.82[AFR][1000 genomes]
rs72708556	0.82[AFR][1000 genomes]
rs72708558	0.82[AFR][1000 genomes]
rs72708565	0.82[AFR][1000 genomes]
rs72708569	0.82[AFR][1000 genomes]
rs72708573	0.82[AFR][1000 genomes]
rs72708581	0.82[AFR][1000 genomes]
rs72708582	0.82[AFR][1000 genomes]
rs72708584	0.82[AFR][1000 genomes]
rs72708586	0.82[AFR][1000 genomes]
rs72708595	0.89[AFR][1000 genomes]
rs72708598	0.89[AFR][1000 genomes]
rs72708600	0.89[AFR][1000 genomes]
rs72710311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511989	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514864	0.93[ASN][1000 genomes]
rs7516430	1.00[CEU][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs7520476	0.82[AFR][1000 genomes]
rs7525622	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7528172	1.00[ASW][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7531962	0.82[EUR][1000 genomes]
rs7532458	1.00[ASW][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7535644	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537483	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7541245	1.00[ASW][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7545467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7547138	0.82[AFR][1000 genomes]
rs7556347	0.82[AFR][1000 genomes]
rs885305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9661159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872251	chr1:146152553-146803630	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv872252	chr1:146471863-147398135	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv999546	chr1:146507577-147356574	Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
4	nsv535123	chr1:146507577-147356574	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
5	nsv492188	chr1:146507649-147381479	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
6	nsv916754	chr1:146507711-147417736	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
7	nsv547673	chr1:146510112-147398135	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
8	nsv547674	chr1:146522722-147396797	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
9	nsv998341	chr1:146531446-147384720	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
10	nsv535124	chr1:146531446-147384720	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
11	nsv1003493	chr1:146531446-147389944	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
12	nsv998209	chr1:146543722-147384720	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
13	nsv535126	chr1:146543722-147384720	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
14	nsv872255	chr1:146550780-146969712	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
15	nsv872256	chr1:146556596-147410973	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1012331	chr1:146603479-147384720	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
17	nsv535131	chr1:146603479-147384720	Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	nsv1009943	chr1:146618929-146893851	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
19	nsv535132	chr1:146618929-146893851	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
20	nsv872257	chr1:146643555-146724923	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv437047	chr1:146643555-146841602	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
22	nsv1005809	chr1:146647822-146886419	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv535134	chr1:146647822-146886419	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
24	nsv1004849	chr1:146661516-147286826	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv535135	chr1:146661516-147286826	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
26	nsv872258	chr1:146662018-146709784	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	nsv547676	chr1:146686228-146996047	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
28	nsv872259	chr1:146688941-146724923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11587707	CHD1L	cis	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:146697600-146707400	Weak transcription	Right Ventricle	heart
2	chr1:146703800-146707600	Weak transcription	Gastric	stomach
3	chr1:146705800-146708600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:146705800-146708800	Enhancers	Liver	Liver
5	chr1:146705800-146709200	Enhancers	HepG2	liver
6	chr1:146705800-146710600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:146705800-146711600	Enhancers	Stomach Mucosa	stomach
8	chr1:146706000-146707600	Weak transcription	Lung	lung
9	chr1:146706000-146707600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:146706000-146707800	Weak transcription	Small Intestine	intestine
11	chr1:146706200-146707400	Weak transcription	Pancreas	Pancrea
12	chr1:146706200-146707600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:146706200-146707600	Weak transcription	Fetal Intestine Large	intestine
14	chr1:146706800-146707600	Weak transcription	Fetal Intestine Small	intestine

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