The 2.0 version of rSNPBase

Variant report

Variant rs55918563
Chromosome Location chr1:146718973-146718974
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:146715400-146722000 Weak transcription Lung lung
2 chr1:146715400-146724200 Weak transcription Esophagus oesophagus
3 chr1:146715600-146727400 Weak transcription Fetal Muscle Trunk muscle
4 chr1:146715600-146736200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:146715600-146749400 Weak transcription Colonic Mucosa Colon
6 chr1:146715800-146719000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:146715800-146731400 Weak transcription Fetal Muscle Leg muscle
8 chr1:146715800-146756800 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:146716000-146719000 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:146716000-146719000 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:146716000-146719000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:146716000-146719000 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:146716000-146719000 Weak transcription Brain Angular Gyrus brain
14 chr1:146716000-146719000 Weak transcription Brain Hippocampus Middle brain
15 chr1:146716000-146719000 Weak transcription Right Atrium heart
16 chr1:146716000-146719000 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr1:146716000-146719200 Weak transcription Primary T cells fromperipheralblood blood
18 chr1:146716000-146719600 Enhancers Liver Liver
19 chr1:146716000-146719800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:146716000-146720200 Weak transcription HUVEC blood vessel
21 chr1:146716000-146722000 Weak transcription Fetal Intestine Small intestine
22 chr1:146716000-146724200 Weak transcription Fetal Stomach stomach
23 chr1:146716000-146726000 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:146716000-146727200 Weak transcription Fetal Intestine Large intestine
25 chr1:146716000-146727200 Weak transcription NH-A brain
26 chr1:146716000-146727400 Weak transcription Adipose Nuclei Adipose
27 chr1:146716000-146727400 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:146716000-146727400 Weak transcription Rectal Smooth Muscle rectum
29 chr1:146716000-146727600 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:146716000-146731600 Weak transcription Fetal Kidney kidney
31 chr1:146716000-146731800 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr1:146716000-146732400 Weak transcription Aorta Aorta
33 chr1:146716000-146732400 Weak transcription Fetal Brain Male brain
34 chr1:146716000-146735600 Weak transcription Ovary ovary
35 chr1:146716000-146739600 Weak transcription Colon Smooth Muscle Colon
36 chr1:146716000-146743800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:146716200-146719800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:146716200-146727800 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:146716200-146732200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:146716400-146719000 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:146716400-146724400 Weak transcription Stomach Smooth Muscle stomach
42 chr1:146716400-146727400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:146716400-146732200 Weak transcription NHLF lung
44 chr1:146716600-146719800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:146716600-146731400 Weak transcription Fetal Brain Female brain
46 chr1:146716800-146719200 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr1:146716800-146719800 Enhancers Primary T helper cells PMA-I stimulated --
48 chr1:146716800-146731000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr1:146716800-146748600 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr1:146717000-146719000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015