Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11577080	0.86[EUR][1000 genomes]
rs11577500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11579174	0.86[EUR][1000 genomes]
rs11588303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588928	0.86[EUR][1000 genomes]
rs11589323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11589814	0.86[EUR][1000 genomes]
rs11589963	0.86[EUR][1000 genomes]
rs11589997	0.86[EUR][1000 genomes]
rs11590034	0.86[EUR][1000 genomes]
rs11590843	0.86[EUR][1000 genomes]
rs17011141	0.84[ASN][1000 genomes]
rs17011142	0.86[EUR][1000 genomes]
rs57043108	0.85[ASN][1000 genomes]
rs57162743	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58820731	0.82[ASN][1000 genomes]
rs58900783	0.82[ASN][1000 genomes]
rs60497013	0.85[ASN][1000 genomes]
rs61075300	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74145035	0.88[ASN][1000 genomes]
rs949618	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945304	chr1:222114347-222131255	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222115400-222131600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222122800-222125400	ZNF genes & repeats	HMEC	breast
3	chr1:222123400-222129400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:222123800-222131200	Weak transcription	HSMM	muscle

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