Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10218478	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11118902	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11588303	0.84[ASN][1000 genomes]
rs11588357	0.84[ASN][1000 genomes]
rs11588746	0.84[ASN][1000 genomes]
rs11589323	0.81[ASN][1000 genomes]
rs12120034	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12123928	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12124556	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12137323	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12140498	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12140529	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13375176	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011141	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011146	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57043108	0.93[ASN][1000 genomes]
rs57162743	0.96[ASN][1000 genomes]
rs60497013	0.93[ASN][1000 genomes]
rs61075300	0.84[ASN][1000 genomes]
rs72740077	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74145035	0.96[ASN][1000 genomes]
rs7520544	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs949618	RP11-815M8.1	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222095400-222117800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:222098000-222118800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:222111800-222114400	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:222112000-222114400	Enhancers	Primary B cells from cord blood	blood
5	chr1:222112200-222114600	Enhancers	Fetal Brain Male	brain
6	chr1:222112200-222114600	Enhancers	GM12878-XiMat	blood
7	chr1:222112800-222114200	Enhancers	HSMM	muscle
8	chr1:222113000-222114200	Enhancers	Dnd41	blood
9	chr1:222113800-222114000	Enhancers	HSMMtube	muscle

Quick Search: