Variant report

Variant	rs11589826
Chromosome Location	chr1:209735837-209735838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11587591	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs12094286	0.89[CHB][hapmap]
rs17014825	0.94[CHB][hapmap]
rs17014842	0.94[CHB][hapmap]
rs6690557	0.91[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7528698	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs9429816	0.90[EUR][1000 genomes]
rs9429817	0.89[EUR][1000 genomes]
rs9429818	0.81[GIH][hapmap];0.87[TSI][hapmap]
rs9429821	0.85[CHB][hapmap];0.82[CHD][hapmap];0.84[TSI][hapmap]
rs9429998	0.86[EUR][1000 genomes]
rs9429999	0.88[EUR][1000 genomes]
rs9430001	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11589826	CAMK1G	cis	parietal	SCAN
rs11589826	RP1-272L16.1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209726600-209737800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:209726800-209738400	Weak transcription	NHEK	skin
3	chr1:209727000-209737600	Weak transcription	HMEC	breast
4	chr1:209728600-209738200	Weak transcription	Esophagus	oesophagus
5	chr1:209734200-209738200	Weak transcription	Fetal Kidney	kidney
6	chr1:209734400-209740600	Weak transcription	HSMM	muscle
7	chr1:209735200-209736200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:209735600-209736400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:209735800-209739000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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