Variant report

Variant	rs12094286
Chromosome Location	chr1:209763682-209763683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489338	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11119309	0.81[ASN][1000 genomes]
rs12058586	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12069172	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12074063	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12080730	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17014758	0.93[ASN][1000 genomes]
rs17014770	0.96[ASN][1000 genomes]
rs17014799	0.80[ASN][1000 genomes]
rs17014808	0.81[ASN][1000 genomes]
rs17014825	0.94[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs17014842	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2072908	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2076225	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2235451	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs926385	0.96[ASN][1000 genomes]
rs9429822	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9430000	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9430005	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12094286	CCDC18	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209760200-209763800	Weak transcription	Brain Germinal Matrix	brain
2	chr1:209760600-209776400	Weak transcription	Fetal Lung	lung
3	chr1:209761600-209765000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:209762600-209763800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:209762600-209764200	Enhancers	Ovary	ovary
6	chr1:209762800-209764200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:209762800-209765000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:209762800-209765800	Weak transcription	Left Ventricle	heart
9	chr1:209763000-209764000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:209763000-209765000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:209763600-209763800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:209763600-209763800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:209763600-209763800	Enhancers	Brain Anterior Caudate	brain
14	chr1:209763600-209763800	Enhancers	Spleen	Spleen
15	chr1:209763600-209764200	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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