Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209726680..209728557-chr1:209737495..209739643,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489338	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119308	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11119309	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12058586	0.84[CHB][hapmap]
rs12084657	0.81[ASN][1000 genomes]
rs12094286	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs17014770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17014799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17014808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17014825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17014842	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs926385	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9430000	0.84[CHB][hapmap]
rs9430001	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209734400-209740600	Weak transcription	HSMM	muscle
2	chr1:209735800-209739000	Weak transcription	Fetal Brain Male	brain
3	chr1:209737400-209738800	Enhancers	Fetal Stomach	stomach
4	chr1:209737800-209739200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:209738000-209738800	Enhancers	Fetal Lung	lung
6	chr1:209738000-209739600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr1:209738000-209740000	Enhancers	Fetal Intestine Large	intestine
8	chr1:209738200-209738800	Enhancers	Fetal Intestine Small	intestine
9	chr1:209738200-209739000	Enhancers	Spleen	Spleen
10	chr1:209738200-209739200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:209738200-209739400	Enhancers	Fetal Brain Female	brain
12	chr1:209738200-209740600	Enhancers	HMEC	breast
13	chr1:209738200-209742000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:209738400-209739000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:209738400-209739000	Weak transcription	Esophagus	oesophagus
16	chr1:209738400-209739200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr1:209738400-209739200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:209738400-209739600	Enhancers	NHEK	skin
19	chr1:209738400-209742000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:209738400-209743000	Weak transcription	Fetal Kidney	kidney

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