Variant report

Variant	rs17014825
Chromosome Location	chr1:209757763-209757764
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209757079..209759138-chr1:209762314..209763873,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489338	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11119308	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11119309	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12058586	0.88[CHB][hapmap]
rs12084657	0.83[ASN][1000 genomes]
rs12094286	0.94[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs17014758	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17014770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014799	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17014808	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014842	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs6690557	0.83[CHB][hapmap]
rs926385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429821	0.83[CHB][hapmap]
rs9430000	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs9430001	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209751000-209758600	Weak transcription	HMEC	breast
2	chr1:209756800-209757800	Flanking Active TSS	Fetal Brain Female	brain
3	chr1:209756800-209758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:209756800-209758000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:209756800-209759200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr1:209756800-209759400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:209756800-209759600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:209757000-209757800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:209757000-209757800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr1:209757000-209757800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
11	chr1:209757000-209758000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:209757000-209758000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:209757000-209758000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:209757000-209758000	Active TSS	Fetal Lung	lung
15	chr1:209757000-209758200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr1:209757000-209758200	Active TSS	Ovary	ovary
17	chr1:209757000-209758200	Active TSS	NH-A	brain
18	chr1:209757000-209758400	Active TSS	Brain Cingulate Gyrus	brain
19	chr1:209757000-209758400	Active TSS	NHLF	lung
20	chr1:209757000-209758600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
21	chr1:209757000-209759400	Active TSS	Brain Angular Gyrus	brain
22	chr1:209757000-209760000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:209757200-209757800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr1:209757200-209757800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
25	chr1:209757200-209758000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
26	chr1:209757200-209758000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr1:209757200-209759800	Enhancers	Fetal Heart	heart
28	chr1:209757400-209757800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:209757400-209757800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
30	chr1:209757400-209757800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
31	chr1:209757400-209757800	Active TSS	Fetal Brain Male	brain
32	chr1:209757400-209758000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:209757600-209757800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
34	chr1:209757600-209757800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr1:209757600-209757800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
36	chr1:209757600-209757800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:209757600-209757800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:209757600-209757800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr1:209757600-209757800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
40	chr1:209757600-209758000	Active TSS	Fetal Kidney	kidney
41	chr1:209757600-209758800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr1:209757600-209758800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr1:209757600-209759000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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