Variant report

Variant	rs11591000
Chromosome Location	chr1:79920534-79920535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10493629	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11162686	0.87[CHB][hapmap]
rs11162695	0.85[EUR][1000 genomes]
rs11162696	0.85[EUR][1000 genomes]
rs11162697	0.85[EUR][1000 genomes]
rs11578751	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588913	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12724768	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12726250	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12727530	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12727721	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12732505	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12734357	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12739748	0.81[ASN][1000 genomes]
rs12739762	0.81[ASN][1000 genomes]
rs12745266	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749113	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12749224	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12754109	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12760991	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331709	0.94[CHB][hapmap]
rs1389946	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1389947	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1494843	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1494852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494856	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1494865	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17417360	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418410	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17418579	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17451181	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17451905	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453037	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2029788	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2101800	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2132055	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2132057	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2860503	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2934867	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3000110	0.80[EUR][1000 genomes]
rs3000178	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015006	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3015098	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3015108	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015120	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs33944981	0.84[EUR][1000 genomes]
rs34146004	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34322872	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34510598	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34554398	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35352017	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35490451	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35624469	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35676104	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35706038	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35707904	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35733452	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35938583	0.80[EUR][1000 genomes]
rs35963120	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36033983	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4414002	0.85[EUR][1000 genomes]
rs4506421	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4604653	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4630085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58635031	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61031256	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61767574	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66530141	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661645	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7516261	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7527570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536196	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7536365	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79905400-79924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:79920200-79920600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links