Variant report

Variant	rs12739762
Chromosome Location	chr13:61663847-61663848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11162695	0.80[EUR][1000 genomes]
rs11162696	0.80[EUR][1000 genomes]
rs11162697	0.80[EUR][1000 genomes]
rs11578751	0.81[ASN][1000 genomes]
rs11588913	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11591000	0.81[ASN][1000 genomes]
rs12724768	0.81[ASN][1000 genomes]
rs12727530	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12727721	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12739748	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12742448	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12745266	0.81[ASN][1000 genomes]
rs12754109	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12760991	0.81[ASN][1000 genomes]
rs1353290	0.80[EUR][1000 genomes]
rs1389940	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1389942	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1389943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1389944	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1494843	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1494852	0.81[ASN][1000 genomes]
rs1494856	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1494857	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1494865	0.85[ASN][1000 genomes]
rs17417360	0.81[ASN][1000 genomes]
rs17418410	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17418579	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17451181	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17451905	0.85[ASN][1000 genomes]
rs17453037	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994938	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2132055	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2934867	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2934868	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2934871	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2934878	0.80[EUR][1000 genomes]
rs3000101	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3000142	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3000155	0.83[EUR][1000 genomes]
rs3000178	0.83[EUR][1000 genomes]
rs3015008	0.80[EUR][1000 genomes]
rs3015013	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3015014	0.81[AMR][1000 genomes]
rs3015017	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3015019	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3015021	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3015022	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3015108	0.83[EUR][1000 genomes]
rs3015120	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34322872	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34554398	0.81[ASN][1000 genomes]
rs34763301	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35446319	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35624469	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35707904	0.82[ASN][1000 genomes]
rs35938583	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36033983	0.81[ASN][1000 genomes]
rs4414002	0.80[EUR][1000 genomes]
rs4506421	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4604653	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58635031	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59395170	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61031256	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66530141	0.81[ASN][1000 genomes]
rs7516261	0.81[EUR][1000 genomes]
rs7527570	0.81[ASN][1000 genomes]
rs7536196	0.83[ASN][1000 genomes]
rs7536365	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61659800-61668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:61660200-61668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:61660600-61664000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:61662200-61664200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr13:61662600-61665400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:61662800-61668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:61663800-61664200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr13:61663800-61664200	Active TSS	HUES6 Cell Line	embryonic stem cell

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