Variant report

Variant	rs2934878
Chromosome Location	chr1:79938342-79938343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10493629	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11162695	0.82[EUR][1000 genomes]
rs11162696	0.82[EUR][1000 genomes]
rs11162697	0.82[EUR][1000 genomes]
rs12739762	0.80[EUR][1000 genomes]
rs1353290	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389940	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1389942	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1389943	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1389944	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1389946	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1389947	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494857	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1494865	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17451181	0.85[EUR][1000 genomes]
rs17451905	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1994938	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2029788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2101800	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2132057	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860503	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2934868	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2934871	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2934873	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3000098	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000101	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3000110	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3000133	0.90[EUR][1000 genomes]
rs3000142	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3000148	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3000155	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3000174	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000175	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000176	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000177	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000178	0.85[EUR][1000 genomes]
rs3000179	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015006	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015013	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015017	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3015019	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3015021	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3015022	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3015025	0.90[EUR][1000 genomes]
rs3015098	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3015107	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015108	0.86[EUR][1000 genomes]
rs3015120	0.84[EUR][1000 genomes]
rs33944981	0.81[EUR][1000 genomes]
rs4414002	0.82[EUR][1000 genomes]
rs6692670	0.88[EUR][1000 genomes]
rs6699018	0.88[EUR][1000 genomes]
rs7516261	0.83[EUR][1000 genomes]
rs7536196	0.83[AMR][1000 genomes]
rs7536365	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7555044	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79938200-79938400	Active TSS	GM12878-XiMat	blood

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