Variant report

Variant	rs1389947
Chromosome Location	chr1:79935822-79935823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10493629	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11578751	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11588913	0.81[EUR][1000 genomes]
rs11591000	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12724768	0.80[EUR][1000 genomes]
rs12726250	0.82[EUR][1000 genomes]
rs12727530	0.81[EUR][1000 genomes]
rs12732505	0.81[EUR][1000 genomes]
rs12734357	0.81[EUR][1000 genomes]
rs12745266	0.86[EUR][1000 genomes]
rs12749113	0.81[EUR][1000 genomes]
rs12749224	0.80[EUR][1000 genomes]
rs12754109	0.85[EUR][1000 genomes]
rs12760991	0.84[EUR][1000 genomes]
rs1353290	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389940	0.86[ASN][1000 genomes]
rs1389942	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1389943	0.87[ASN][1000 genomes]
rs1389944	0.87[ASN][1000 genomes]
rs1389946	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494843	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1494852	0.85[EUR][1000 genomes]
rs1494856	0.81[EUR][1000 genomes]
rs1494857	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1494865	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17417360	0.85[EUR][1000 genomes]
rs17418410	0.85[EUR][1000 genomes]
rs17418579	0.81[EUR][1000 genomes]
rs17451905	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17453037	0.80[EUR][1000 genomes]
rs1994938	0.87[ASN][1000 genomes]
rs2029788	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2101800	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2132055	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2132057	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860503	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2934867	0.84[EUR][1000 genomes]
rs2934868	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2934871	0.86[ASN][1000 genomes]
rs2934873	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2934878	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3000098	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3000110	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3000142	0.86[ASN][1000 genomes]
rs3000148	0.84[ASN][1000 genomes]
rs3000155	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3000174	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000175	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000176	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000177	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000179	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015006	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015008	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015013	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015017	0.87[ASN][1000 genomes]
rs3015019	0.86[ASN][1000 genomes]
rs3015021	0.85[ASN][1000 genomes]
rs3015022	0.86[ASN][1000 genomes]
rs3015098	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3015107	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34146004	0.81[EUR][1000 genomes]
rs34322872	0.84[EUR][1000 genomes]
rs34510598	0.81[EUR][1000 genomes]
rs34554398	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35352017	0.81[EUR][1000 genomes]
rs35490451	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35676104	0.81[EUR][1000 genomes]
rs35706038	0.81[EUR][1000 genomes]
rs35707904	0.85[EUR][1000 genomes]
rs35733452	0.81[EUR][1000 genomes]
rs35963120	0.81[EUR][1000 genomes]
rs36033983	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4506421	0.88[CEU][hapmap]
rs4604653	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4630085	0.81[EUR][1000 genomes]
rs58635031	0.84[EUR][1000 genomes]
rs61031256	0.84[EUR][1000 genomes]
rs61767574	0.85[EUR][1000 genomes]
rs66530141	0.84[EUR][1000 genomes]
rs6661645	0.81[EUR][1000 genomes]
rs7527570	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7536196	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7536365	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79935200-79937800	Enhancers	GM12878-XiMat	blood

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