Variant report

Variant	rs6692670
Chromosome Location	chr1:79833514-79833515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11162695	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11162696	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11162697	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12724768	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12726250	0.82[AMR][1000 genomes]
rs12732505	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12734357	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12749113	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12749224	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1353290	0.88[EUR][1000 genomes]
rs1389946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17451181	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2029788	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2101800	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2132057	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2860503	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2934868	0.83[EUR][1000 genomes]
rs2934873	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2934878	0.88[EUR][1000 genomes]
rs2989850	0.91[ASN][1000 genomes]
rs3000098	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3000110	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3000133	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3000155	0.85[EUR][1000 genomes]
rs3000174	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3000175	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3000176	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3000177	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3000178	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3000179	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3015006	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3015008	0.88[EUR][1000 genomes]
rs3015013	0.84[EUR][1000 genomes]
rs3015025	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3015098	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3015107	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3015108	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3015120	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs33944981	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34146004	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34510598	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35352017	0.84[AMR][1000 genomes]
rs35676104	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35706038	0.84[AMR][1000 genomes]
rs35733452	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35963120	0.83[AMR][1000 genomes]
rs4414002	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4630085	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6661645	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6699018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516261	0.84[EUR][1000 genomes]
rs7555044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv870962	chr1:79755185-79835066	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830337	chr1:79791879-79913241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546633	chr1:79794719-79877035	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79831000-79834400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:79831200-79836800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:79832600-79833600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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