Variant report

Variant	rs1159234
Chromosome Location	chr11:36491956-36491957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12275362	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1304568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331479	1.00[CHB][hapmap]
rs4365030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030461	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030480	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510428	1.00[CHB][hapmap]
rs718011	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630172	1.00[CHB][hapmap]
rs9630174	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36471800-36506800	Weak transcription	Gastric	stomach
2	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
3	chr11:36473200-36505600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
5	chr11:36478200-36508800	Weak transcription	Fetal Brain Female	brain
6	chr11:36478600-36506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:36478800-36492200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:36478800-36505400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:36478800-36510400	Weak transcription	Right Ventricle	heart
10	chr11:36478800-36512200	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:36481800-36508600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:36484400-36492200	Weak transcription	Aorta	Aorta
13	chr11:36484400-36506800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:36484800-36505600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:36485000-36499400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:36485600-36501400	Weak transcription	Ovary	ovary
17	chr11:36485600-36504800	Weak transcription	Fetal Stomach	stomach
18	chr11:36485800-36506600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:36486000-36505600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:36487800-36499000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:36488200-36495200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:36488400-36496800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:36488800-36496800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:36488800-36507400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:36489000-36492600	Enhancers	HSMM	muscle
26	chr11:36489000-36505600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:36489200-36492600	Enhancers	Fetal Muscle Leg	muscle
28	chr11:36489200-36495000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:36489200-36505400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:36489200-36510600	Weak transcription	Colonic Mucosa	Colon
31	chr11:36489600-36493000	Weak transcription	HMEC	breast
32	chr11:36489600-36493200	Weak transcription	Spleen	Spleen
33	chr11:36489600-36504800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:36489800-36492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:36489800-36492800	Enhancers	NH-A	brain
36	chr11:36489800-36493000	Weak transcription	NHEK	skin
37	chr11:36489800-36494600	Weak transcription	Fetal Intestine Small	intestine
38	chr11:36489800-36495200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:36489800-36500000	Weak transcription	Fetal Intestine Large	intestine
40	chr11:36489800-36504800	Weak transcription	Fetal Thymus	thymus
41	chr11:36490000-36492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:36490000-36492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:36490000-36530400	Weak transcription	Esophagus	oesophagus
44	chr11:36490400-36492600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:36490600-36492200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:36490600-36492400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:36490800-36492200	Enhancers	NHLF	lung
48	chr11:36490800-36492400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:36490800-36492400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr11:36490800-36492600	Enhancers	Psoas Muscle	Psoas

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