Variant report

Variant	rs11593565
Chromosome Location	chr10:61865449-61865450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61860379..61863071-chr10:61864008..61865521,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10994188	0.83[EUR][1000 genomes]
rs10994207	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11593303	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11596060	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11596068	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11597608	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11598556	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599447	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251392	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7084246	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7902923	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
7	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
9	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
10	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
12	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
13	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
15	chr10:61843000-61868600	Weak transcription	Ovary	ovary
16	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
17	chr10:61847000-61868200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:61847200-61865600	Weak transcription	Aorta	Aorta
19	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:61848200-61868000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:61848200-61868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:61848200-61874800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:61849200-61882600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:61851800-61869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:61857200-61882600	Weak transcription	NH-A	brain
28	chr10:61857400-61867200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:61857400-61889800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:61857800-61889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:61859800-61867800	Weak transcription	Fetal Intestine Small	intestine
32	chr10:61859800-61889800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:61859800-61900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:61860000-61874800	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:61860000-61875000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:61860000-61900000	Weak transcription	Fetal Brain Male	brain
37	chr10:61860400-61874000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:61860600-61883400	Weak transcription	Brain Substantia Nigra	brain
39	chr10:61861400-61868800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:61861600-61866800	Strong transcription	Placenta	Placenta
41	chr10:61861600-61869200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:61861800-61867400	Weak transcription	A549	lung
43	chr10:61862200-61866400	Weak transcription	Liver	Liver
44	chr10:61863200-61865800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:61863200-61869200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:61863400-61866400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:61863600-61874800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:61863800-61883400	Weak transcription	Brain Angular Gyrus	brain
49	chr10:61864000-61865800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:61864400-61865800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links