Variant report

Variant	rs11598556
Chromosome Location	chr10:61887279-61887280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61886285..61888760-chr10:61892821..61895195,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10994207	0.93[EUR][1000 genomes]
rs11593303	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11593565	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11596060	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11596068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11597608	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599447	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12251392	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084246	0.81[EUR][1000 genomes]
rs7902923	0.97[EUR][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
3	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
4	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:61857400-61889800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:61857800-61889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:61859800-61889800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:61859800-61900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:61860000-61900000	Weak transcription	Fetal Brain Male	brain
11	chr10:61866400-61889800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:61867000-61910200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:61867600-61891200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61868800-61889600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:61868800-61891400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:61868800-61893000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:61869000-61913200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:61869200-61895800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:61875000-61889800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:61875000-61898800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:61875200-61899400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:61875200-61910800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:61879600-61930200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:61880000-61893000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:61882200-61900600	Weak transcription	Gastric	stomach
26	chr10:61883400-61889400	Weak transcription	Fetal Intestine Small	intestine
27	chr10:61883400-61889600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:61883400-61889600	Weak transcription	Fetal Intestine Large	intestine
29	chr10:61883600-61888600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:61883600-61890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:61883600-61891400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:61883600-61915000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:61883800-61888600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:61883800-61889800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:61883800-61889800	Weak transcription	Stomach Mucosa	stomach
36	chr10:61883800-61894200	Weak transcription	Fetal Heart	heart
37	chr10:61883800-61899200	Weak transcription	NH-A	brain
38	chr10:61883800-61899400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:61883800-61900000	Weak transcription	Brain Angular Gyrus	brain
40	chr10:61883800-61900800	Weak transcription	Brain Anterior Caudate	brain
41	chr10:61884000-61888600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:61884000-61889200	Weak transcription	NHEK	skin
43	chr10:61884000-61898400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:61884000-61899800	Weak transcription	HSMMtube	muscle
45	chr10:61884200-61889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:61884400-61889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:61884600-61889800	Weak transcription	HMEC	breast
48	chr10:61884600-61891400	Weak transcription	Left Ventricle	heart
49	chr10:61884600-61895000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:61886000-61889800	Weak transcription	Psoas Muscle	Psoas

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