Variant report

Variant	rs11594875
Chromosome Location	chr10:54763111-54763112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10508979	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10508980	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10824851	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003297	0.94[ASN][1000 genomes]
rs11003298	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003300	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003301	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003305	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003306	0.95[EUR][1000 genomes]
rs11003307	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003308	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003309	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003311	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003313	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003314	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003316	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003317	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003318	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003319	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003320	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003321	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003322	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003323	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003324	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003325	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003326	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003327	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003328	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11592153	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11594477	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11594930	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596013	0.92[EUR][1000 genomes]
rs11596708	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598902	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12354890	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12355649	0.95[EUR][1000 genomes]
rs12356355	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12358058	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12359301	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343049	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343050	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573146	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573148	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936072	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936083	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936094	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936097	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936108	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936179	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091176	0.94[EUR][1000 genomes]
rs2384101	0.94[ASN][1000 genomes]
rs2384102	0.94[ASN][1000 genomes]
rs2891424	0.93[ASN][1000 genomes]
rs35747583	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4083148	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4258288	0.94[ASN][1000 genomes]
rs4294491	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4403716	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4564234	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4589197	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4611108	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4622164	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4636566	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56667843	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56999418	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59171053	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59605539	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59993736	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60635951	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61134451	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61387465	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61844531	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074652	0.94[EUR][1000 genomes]
rs7084055	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086840	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7475455	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7893356	0.94[ASN][1000 genomes]
rs7893527	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894017	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894623	0.94[ASN][1000 genomes]
rs7894718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896118	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899425	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899454	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899582	0.95[EUR][1000 genomes]
rs7900326	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7903815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905190	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905634	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7906006	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7906107	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7907039	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910673	0.94[ASN][1000 genomes]
rs7912023	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912367	0.94[EUR][1000 genomes]
rs7912728	0.95[EUR][1000 genomes]
rs7914381	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915183	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915769	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7917355	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918032	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918282	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921542	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921965	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7923744	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787467	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787531	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787652	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54734600-54764600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:54755800-54764400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:54757200-54766400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:54759800-54767200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:54760200-54765800	Weak transcription	Stomach Mucosa	stomach
6	chr10:54760800-54764400	Weak transcription	HepG2	liver
7	chr10:54760800-54764800	Weak transcription	Liver	Liver
8	chr10:54760800-54765600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:54761000-54764800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:54761000-54766000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:54762600-54763400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:54762800-54763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:54762800-54763200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:54762800-54763400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links