Variant report

Variant	rs16936282
Chromosome Location	chr10:54767781-54767782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54767534..54770532-chr10:54779157..54781249,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10508979	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10508980	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10824851	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003297	0.94[ASN][1000 genomes]
rs11003298	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003300	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003301	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003305	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003306	0.95[EUR][1000 genomes]
rs11003307	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003308	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003309	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003311	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003313	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003314	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003316	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003317	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003318	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003319	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003320	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003321	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003322	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003323	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003324	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003325	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003326	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003327	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003328	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11592153	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11594477	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11594875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594930	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596013	0.92[EUR][1000 genomes]
rs11596708	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598902	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12354890	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12355649	0.95[EUR][1000 genomes]
rs12356355	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12358058	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12359301	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343049	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343050	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573146	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573148	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936072	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936083	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936094	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936097	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936108	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936179	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091176	0.94[EUR][1000 genomes]
rs2384101	0.94[ASN][1000 genomes]
rs2384102	0.94[ASN][1000 genomes]
rs2891424	0.93[ASN][1000 genomes]
rs35747583	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4083148	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4258288	0.94[ASN][1000 genomes]
rs4294491	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4403716	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4564234	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4589197	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4611108	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4622164	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4636566	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56667843	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56999418	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59171053	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59605539	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59993736	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60635951	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61134451	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61387465	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61844531	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074652	0.94[EUR][1000 genomes]
rs7084055	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086840	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7475455	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7893356	0.94[ASN][1000 genomes]
rs7893527	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894017	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894623	0.94[ASN][1000 genomes]
rs7894718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896118	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899425	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899454	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899582	0.95[EUR][1000 genomes]
rs7900326	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7903815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905190	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905634	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7906006	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7906107	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7907039	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910673	0.94[ASN][1000 genomes]
rs7912023	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912367	0.94[EUR][1000 genomes]
rs7912728	0.95[EUR][1000 genomes]
rs7914381	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915183	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915769	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7917355	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918032	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918282	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921542	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921965	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7923744	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787467	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787531	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787652	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1826571	chr10:54765608-54788821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895405	chr10:54765608-54824741	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54764400-54771200	Enhancers	HepG2	liver
2	chr10:54765200-54782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:54766800-54770000	Weak transcription	Stomach Mucosa	stomach
4	chr10:54767400-54769600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:54767600-54768800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:54767600-54770000	Weak transcription	Fetal Lung	lung
7	chr10:54767600-54770200	Weak transcription	Liver	Liver
8	chr10:54767600-54782200	Weak transcription	Fetal Kidney	kidney

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