Variant report

Variant	rs11599561
Chromosome Location	chr10:44833031-44833032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10900020	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10900022	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10900023	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10900024	0.80[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238987	1.00[GIH][hapmap]
rs11238989	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11238990	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11238994	0.87[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11599730	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12355549	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12358646	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360225	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069891	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:44830400-44833200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
6	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
9	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
10	chr10:44831000-44835000	Weak transcription	Fetal Thymus	thymus
11	chr10:44831200-44833200	Enhancers	Psoas Muscle	Psoas
12	chr10:44831400-44834000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44831400-44834800	Weak transcription	Placenta	Placenta
14	chr10:44831400-44835600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
16	chr10:44832200-44835800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:44832800-44835000	Weak transcription	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links