Variant report

Variant	rs10900020
Chromosome Location	chr10:44827197-44827198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508884	0.84[YRI][hapmap]
rs10900021	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10900022	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238987	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11238988	1.00[EUR][1000 genomes]
rs11238989	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11238990	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11599561	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12357893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360225	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2028100	1.00[YRI][hapmap]
rs4366439	0.88[YRI][hapmap]
rs7069891	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7904065	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Schizophrenia	23212062	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44823000-44827200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:44823200-44830200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links