Variant report

Variant	rs11238987
Chromosome Location	chr10:44821220-44821221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10900020	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10900022	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11238985	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11238986	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11599561	1.00[GIH][hapmap]
rs12356719	0.89[EUR][1000 genomes]
rs12357893	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12360225	1.00[GIH][hapmap]
rs2028100	0.88[YRI][hapmap]
rs7069891	1.00[GIH][hapmap]
rs7904065	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
2	chr10:44819400-44822400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:44820000-44821400	Enhancers	Fetal Intestine Large	intestine
4	chr10:44820000-44822200	Enhancers	HepG2	liver
5	chr10:44820000-44822400	Enhancers	Stomach Mucosa	stomach
6	chr10:44820000-44823000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:44820000-44823200	Enhancers	Pancreas	Pancrea
8	chr10:44820200-44821400	Weak transcription	Right Ventricle	heart
9	chr10:44820200-44821800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:44820400-44821800	Weak transcription	Fetal Thymus	thymus
11	chr10:44820600-44822400	Enhancers	Fetal Muscle Leg	muscle
12	chr10:44820600-44822400	Enhancers	Psoas Muscle	Psoas
13	chr10:44820800-44822400	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:44820800-44822400	Enhancers	Right Atrium	heart
15	chr10:44820800-44822400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:44821000-44822400	Enhancers	Colon Smooth Muscle	Colon
17	chr10:44821200-44822000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:44821200-44822200	Weak transcription	Small Intestine	intestine
19	chr10:44821200-44822800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links