Variant report

Variant	rs11602462
Chromosome Location	chr11:121148609-121148610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11600741	1.00[AMR][1000 genomes]
rs11600821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602717	1.00[AMR][1000 genomes]
rs11604157	1.00[AMR][1000 genomes]
rs11604183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11604709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11605339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11605544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11606048	1.00[AMR][1000 genomes]
rs11606526	1.00[AMR][1000 genomes]
rs11606915	1.00[AMR][1000 genomes]
rs11607252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11608091	1.00[AMR][1000 genomes]
rs28427105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468476	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28471082	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28615397	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121148200-121151800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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