Variant report

Variant	rs28471082
Chromosome Location	chr11:121140189-121140190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11600741	1.00[AMR][1000 genomes]
rs11600821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602462	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602534	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602717	1.00[AMR][1000 genomes]
rs11604157	1.00[AMR][1000 genomes]
rs11604183	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11604709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11605339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11605544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11606048	1.00[AMR][1000 genomes]
rs11606526	1.00[AMR][1000 genomes]
rs11606915	1.00[AMR][1000 genomes]
rs11607252	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11608091	1.00[AMR][1000 genomes]
rs28427105	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28615397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121138600-121141800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:121138800-121140400	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:121138800-121141800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:121139000-121140200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:121139000-121142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:121139200-121142400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:121139600-121143000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:121139800-121140800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:121139800-121140800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:121139800-121141800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:121140000-121140800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:121140000-121141000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:121140000-121141000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links