Variant report

Variant	rs11602717
Chromosome Location	chr11:121083778-121083779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11600741	1.00[AMR][1000 genomes]
rs11600821	1.00[AMR][1000 genomes]
rs11602462	1.00[AMR][1000 genomes]
rs11602534	1.00[AMR][1000 genomes]
rs11604157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11604183	1.00[AMR][1000 genomes]
rs11604709	1.00[AMR][1000 genomes]
rs11605339	1.00[AMR][1000 genomes]
rs11605544	1.00[AMR][1000 genomes]
rs11606048	1.00[AMR][1000 genomes]
rs11606526	1.00[AMR][1000 genomes]
rs11606915	1.00[AMR][1000 genomes]
rs11607252	1.00[AMR][1000 genomes]
rs11608091	1.00[AMR][1000 genomes]
rs28427105	1.00[AMR][1000 genomes]
rs28468476	1.00[AMR][1000 genomes]
rs28471082	1.00[AMR][1000 genomes]
rs28615397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121077800-121084000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:121078800-121084000	Weak transcription	Liver	Liver
3	chr11:121082400-121084200	Enhancers	HSMM	muscle
4	chr11:121082600-121083800	Weak transcription	Fetal Heart	heart
5	chr11:121083000-121084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:121083000-121084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:121083200-121084200	Enhancers	HSMMtube	muscle
8	chr11:121083400-121084400	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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