Variant report

Variant	rs11604517
Chromosome Location	chr11:120742196-120742197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120734140..120737057-chr11:120742079..120744802,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM29-2	chr11:120738642-120744474	ENSG00000250493.2

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11600866	1.00[EUR][1000 genomes]
rs11601137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601226	1.00[EUR][1000 genomes]
rs11602311	1.00[EUR][1000 genomes]
rs11602668	1.00[EUR][1000 genomes]
rs11602752	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11602871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11606811	1.00[EUR][1000 genomes]
rs11607770	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11824329	1.00[EUR][1000 genomes]
rs57657899	1.00[EUR][1000 genomes]
rs60319624	1.00[EUR][1000 genomes]
rs73584429	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120714400-120746600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120715400-120745000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120729200-120751200	Weak transcription	Ovary	ovary
6	chr11:120730000-120746600	Weak transcription	Fetal Lung	lung
7	chr11:120730800-120745200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:120734400-120743200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:120738600-120743000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120738600-120746800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:120738600-120747400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:120738600-120755600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:120739000-120749200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:120739200-120746000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:120739200-120755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:120740200-120748200	Weak transcription	Brain Germinal Matrix	brain
17	chr11:120740200-120752400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:120740400-120752600	Weak transcription	Fetal Brain Male	brain
19	chr11:120740600-120746000	Weak transcription	Spleen	Spleen
20	chr11:120741400-120744400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:120741400-120745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links